STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6563PFAM: glucose-methanol-choline oxidoreductase; KEGG: pat:Patl_2686 glucose-methanol-choline oxidoreductase. (569 aa)    
Predicted Functional Partners:
Slin_6564
KEGG: cja:CJA_3100 hypothetical protein.
 
 
 0.892
Slin_4689
KEGG: cja:CJA_3100 hypothetical protein.
 
 
 0.799
Slin_4950
KEGG: amc:MADE_00435 twin-arginine translocation pathway signal.
 
 
 0.799
Slin_5805
KEGG: cak:Caul_4605 hypothetical protein.
 
 
 0.798
Slin_1890
KEGG: cja:CJA_3100 hypothetical protein.
 
 
 0.794
Slin_4771
PFAM: protein of unknown function DUF1080; KEGG: ccs:CCNA_01698 cycloisomaltooligosaccharide glucanotransferase precursor.
 
     0.622
Slin_5836
PFAM: WD40 repeat, subgroup; SMART: WD-40 repeat protein; KEGG: hypothetical protein.
    
 0.550
Slin_0458
PFAM: Ankyrin; SMART: Ankyrin; KEGG: pat:Patl_1108 ankyrin.
    
 0.533
Slin_3462
PFAM: protein of unknown function DUF1080; KEGG: swd:Swoo_0366 hypothetical protein.
 
     0.509
Slin_6562
TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: reh:H16_B2572 ribonuclease BN.
       0.473
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.