STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6614PFAM: PhoPQ-activated pathogenicity-related protein PqaA type; KEGG: noc:Noc_1356 hypothetical protein. (457 aa)    
Predicted Functional Partners:
Slin_6613
KEGG: acp:A2cp1_4362 hypothetical protein.
 
     0.902
Slin_6612
Hypothetical protein.
 
     0.874
Slin_6611
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: mxa:MXAN_4746 TonB-dependent receptor.
 
     0.860
Slin_6607
KEGG: hypothetical protein.
 
     0.790
Slin_6608
Two component regulator propeller domain protein; KEGG: hypothetical protein.
  
     0.737
Slin_2260
KEGG: hypothetical protein.
  
     0.593
Slin_1842
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rhi:NGR_b21640 putative sugar phosphate isomerase/epimerase IoIE.
  
     0.588
Slin_6603
PFAM: metallophosphoesterase; KEGG: dat:HRM2_13400 putative phosphohydrolase.
 
     0.573
Slin_0042
PFAM: metallophosphoesterase; KEGG: sse:Ssed_1747 hypothetical protein.
  
     0.526
Slin_5488
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ppr:PBPRB0269 putative L-xylulose 5-phosphate 3-epimerase.
  
     0.518
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.