STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slin_6633Hypothetical protein; KEGG: similar to Transmembrane and TPR repeat- containing protein 3. (613 aa)    
Predicted Functional Partners:
Slin_3426
KEGG: hypothetical protein.
  
 
   0.732
Slin_0325
PFAM: cell surface receptor IPT/TIG domain protein; KEGG: rpd:RPD_3003 outer membrane autotransporter barrel.
  
     0.706
Slin_0303
Hypothetical protein; KEGG: gme:Gmet_2727 OmpA/MotB.
  
     0.702
Slin_5079
KEGG: hypothetical protein.
  
   
 0.699
Slin_2547
Hypothetical protein.
  
   0.694
Slin_3438
PFAM: Late embryogenesis abundant protein 2; SMART: Water Stress and Hypersensitive response domain protein; KEGG: hypothetical protein.
  
     0.688
Slin_0554
PFAM: RagB/SusD domain protein.
 
    0.675
Slin_1362
Hypothetical protein.
  
 
   0.674
Slin_2257
TIGRFAM: conserved repeat domain protein; KEGG: CH211-217K17.8; hypothetical LOC798921.
  
 
   0.658
Slin_4799
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat; KEGG: rfe:RF_0310 TPR repeat-containing protein.
  
     0.645
Your Current Organism:
Spirosoma linguale
NCBI taxonomy Id: 504472
Other names: S. linguale DSM 74, Spirosoma linguale DSM 74, Spirosoma linguale str. DSM 74, Spirosoma linguale strain DSM 74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.