Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
cu0226 | cu0843 | uroporphyrin-III C-methyltransferase / uroporphyrinogen-III synthase. | uroporphyrinogen-III methylase. | 0.998 |
cu0226 | cu1741 | uroporphyrin-III C-methyltransferase / uroporphyrinogen-III synthase. | Hypothetical protein. | 0.746 |
cu0226 | cu1742 | uroporphyrin-III C-methyltransferase / uroporphyrinogen-III synthase. | Sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.519 |
cu0226 | cu1743 | uroporphyrin-III C-methyltransferase / uroporphyrinogen-III synthase. | Sulfate adenylyltransferase subunit 2. | 0.624 |
cu0226 | cu1744 | uroporphyrin-III C-methyltransferase / uroporphyrinogen-III synthase. | Adenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. | 0.624 |
cu0226 | cu1757 | uroporphyrin-III C-methyltransferase / uroporphyrinogen-III synthase. | Sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.852 |
cu0843 | cu0226 | uroporphyrinogen-III methylase. | uroporphyrin-III C-methyltransferase / uroporphyrinogen-III synthase. | 0.998 |
cu0843 | cu1741 | uroporphyrinogen-III methylase. | Hypothetical protein. | 0.967 |
cu0843 | cu1742 | uroporphyrinogen-III methylase. | Sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.619 |
cu0843 | cu1743 | uroporphyrinogen-III methylase. | Sulfate adenylyltransferase subunit 2. | 0.840 |
cu0843 | cu1744 | uroporphyrinogen-III methylase. | Adenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. | 0.910 |
cu0843 | cu1757 | uroporphyrinogen-III methylase. | Sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.986 |
cu1625 | cu1741 | Hypothetical protein. | Hypothetical protein. | 0.503 |
cu1656 | cu1741 | Amino acid export carrier protein. | Hypothetical protein. | 0.422 |
cu1740 | cu1741 | Putative membrane protein. | Hypothetical protein. | 0.935 |
cu1740 | cu1742 | Putative membrane protein. | Sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.868 |
cu1740 | cu1743 | Putative membrane protein. | Sulfate adenylyltransferase subunit 2. | 0.862 |
cu1740 | cu1744 | Putative membrane protein. | Adenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. | 0.883 |
cu1740 | cu1757 | Putative membrane protein. | Sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.561 |
cu1740 | cu1758 | Putative membrane protein. | Putative ferredoxin/ferredoxin-NADP reductase. | 0.614 |
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