STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC38905.1Leucine rich repeat-containing protein. (407 aa)    
Predicted Functional Partners:
SMC80724.1
EF-hand domain pair.
   
 0.919
SMC78351.1
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
   
 0.878
SMC65100.1
Ankyrin repeat.
 
 0.871
SMC43171.1
Hypothetical protein.
 
 0.855
SMC64680.1
Ankyrin repeat-containing protein.
 
 0.830
SMC32354.1
Ankyrin repeat-containing protein.
  
 0.786
SMC87900.1
Hypothetical protein.
  
 0.786
SMC36847.1
Chloride channel protein, CIC family.
   
 0.759
SMC41594.1
ATPase family associated with various cellular activities (AAA).
    
 0.758
SMC84225.1
Arabinose-5-phosphate isomerase; Belongs to the SIS family. GutQ/KpsF subfamily.
  
  0.702
Your Current Organism:
Cellulophaga tyrosinoxydans
NCBI taxonomy Id: 504486
Other names: C. tyrosinoxydans, Cellulophaga sp. EM41, Cellulophaga tyrosinoxydans Kahng et al. 2009, DSM 21164, KCTC 22297, strain EM41
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.