STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC38966.13-oxoacid CoA-transferase subunit B. (217 aa)    
Predicted Functional Partners:
SMC38944.1
3-oxoacid CoA-transferase subunit A.
 0.999
SMC87130.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.970
SMC55533.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.950
SMC75585.1
3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.945
SMC60896.1
hydroxymethylglutaryl-CoA lyase.
  
 
 0.943
SMC87138.1
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.889
SMC38953.1
Four helix bundle protein.
       0.638
SMC38925.1
Gliding motility-associated lipoprotein GldH.
       0.538
SMC84204.1
Alkylhydroperoxidase AhpD family core domain-containing protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
 
 0.536
SMC38920.1
Cell fate regulator YaaT, PSP1 superfamily (controls sporulation, competence, biofilm development).
       0.535
Your Current Organism:
Cellulophaga tyrosinoxydans
NCBI taxonomy Id: 504486
Other names: C. tyrosinoxydans, Cellulophaga sp. EM41, Cellulophaga tyrosinoxydans Kahng et al. 2009, DSM 21164, KCTC 22297, strain EM41
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