STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC41554.1Hypothetical protein. (98 aa)    
Predicted Functional Partners:
SMC41568.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
     0.949
SMC41519.1
Toprim-like.
 
     0.936
SMC41498.1
Virulence-associated protein E.
 
     0.810
SMC41490.1
Transcriptional regulator, AlpA family.
 
     0.786
SMC39876.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
     0.784
SMC39914.1
Hypothetical protein.
  
     0.769
SMC41579.1
Hypothetical protein.
       0.747
SMC39902.1
Toprim-like.
 
     0.733
SMC39921.1
DNA binding domain-containing protein, excisionase family.
  
     0.619
SMC45626.1
Hypothetical protein.
  
     0.495
Your Current Organism:
Cellulophaga tyrosinoxydans
NCBI taxonomy Id: 504486
Other names: C. tyrosinoxydans, Cellulophaga sp. EM41, Cellulophaga tyrosinoxydans Kahng et al. 2009, DSM 21164, KCTC 22297, strain EM41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.