STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC42858.1Hemoglobin/transferrin/lactoferrin receptor protein. (809 aa)    
Predicted Functional Partners:
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.809
SMC37254.1
Sortilin, neurotensin receptor 3.
  
     0.578
SMC62463.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
   0.571
SMC87170.1
Uncharacterized protein.
  
     0.523
SMC38153.1
Hypothetical protein.
  
     0.504
SMC62671.1
PepSY-associated TM region.
  
     0.478
SMC63366.1
Hypothetical protein.
  
 
   0.457
SMC42827.1
Hypothetical protein.
       0.456
SMC42834.1
Hypothetical protein.
       0.456
SMC46269.1
Outer membrane protein TolC.
  
     0.454
Your Current Organism:
Cellulophaga tyrosinoxydans
NCBI taxonomy Id: 504486
Other names: C. tyrosinoxydans, Cellulophaga sp. EM41, Cellulophaga tyrosinoxydans Kahng et al. 2009, DSM 21164, KCTC 22297, strain EM41
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