STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC43459.1Outer membrane receptor proteins, mostly Fe transport. (920 aa)    
Predicted Functional Partners:
SMC43461.1
Hypothetical protein.
       0.780
SMC36072.1
Hypothetical protein.
  
     0.702
glmS
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
       0.500
SMC57796.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
   0.497
SMC34077.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.492
SMC34073.1
Protein TonB.
  
   0.491
SMC39359.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.485
SMC63366.1
Hypothetical protein.
  
 
   0.484
SMC52365.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.480
SMC66890.1
Hypothetical protein.
  
   0.479
Your Current Organism:
Cellulophaga tyrosinoxydans
NCBI taxonomy Id: 504486
Other names: C. tyrosinoxydans, Cellulophaga sp. EM41, Cellulophaga tyrosinoxydans Kahng et al. 2009, DSM 21164, KCTC 22297, strain EM41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.