Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMC44179.1 | SMC44198.1 | SAMN05660703_1224 | SAMN05660703_1226 | Nucleoside-diphosphate-sugar epimerase. | Hypothetical protein. | 0.445 |
SMC44179.1 | SMC44207.1 | SAMN05660703_1224 | SAMN05660703_1227 | Nucleoside-diphosphate-sugar epimerase. | Hypothetical protein. | 0.445 |
SMC44179.1 | tyrS | SAMN05660703_1224 | SAMN05660703_1225 | Nucleoside-diphosphate-sugar epimerase. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.629 |
SMC44198.1 | SMC44179.1 | SAMN05660703_1226 | SAMN05660703_1224 | Hypothetical protein. | Nucleoside-diphosphate-sugar epimerase. | 0.445 |
SMC44198.1 | SMC44207.1 | SAMN05660703_1226 | SAMN05660703_1227 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SMC44198.1 | tyrS | SAMN05660703_1226 | SAMN05660703_1225 | Hypothetical protein. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.618 |
SMC44207.1 | SMC44179.1 | SAMN05660703_1227 | SAMN05660703_1224 | Hypothetical protein. | Nucleoside-diphosphate-sugar epimerase. | 0.445 |
SMC44207.1 | SMC44198.1 | SAMN05660703_1227 | SAMN05660703_1226 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SMC44207.1 | tyrS | SAMN05660703_1227 | SAMN05660703_1225 | Hypothetical protein. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.618 |
argS | glyQS | SAMN05660703_2189 | SAMN05660703_1119 | arginyl-tRNA synthetase. | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.617 |
argS | leuS | SAMN05660703_2189 | SAMN05660703_1211 | arginyl-tRNA synthetase. | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.924 |
argS | metG | SAMN05660703_2189 | SAMN05660703_0534 | arginyl-tRNA synthetase. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.980 |
argS | pheT | SAMN05660703_2189 | SAMN05660703_1634 | arginyl-tRNA synthetase. | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.841 |
argS | prfA | SAMN05660703_2189 | SAMN05660703_2050 | arginyl-tRNA synthetase. | Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.576 |
argS | tyrS | SAMN05660703_2189 | SAMN05660703_1225 | arginyl-tRNA synthetase. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.716 |
glyQS | argS | SAMN05660703_1119 | SAMN05660703_2189 | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | arginyl-tRNA synthetase. | 0.617 |
glyQS | leuS | SAMN05660703_1119 | SAMN05660703_1211 | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.734 |
glyQS | metG | SAMN05660703_1119 | SAMN05660703_0534 | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.557 |
glyQS | pheT | SAMN05660703_1119 | SAMN05660703_1634 | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.536 |
glyQS | tyrS | SAMN05660703_1119 | SAMN05660703_1225 | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.639 |
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