STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC55085.1LPS assembly outer membrane protein LptD (organic solvent tolerance protein OstA). (914 aa)    
Predicted Functional Partners:
SMC52371.1
Membrane protein YfhO.
  
     0.755
SMC32617.1
Surface antigen.
  
  
 0.681
SMC43211.1
Ig-like domain-containing protein.
  
     0.662
SMC84618.1
Hypothetical protein.
  
    0.660
SMC80649.1
Lipopolysaccharide export system permease protein.
 
  
 0.655
SMC62404.1
Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
   
 0.634
SMC55077.1
N-acetylmuramoyl-L-alanine amidase.
       0.630
SMC34577.1
Protein of unknown function.
  
     0.627
SMC55100.1
2-iminobutanoate/2-iminopropanoate deaminase.
       0.625
SMC55071.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
   
 0.622
Your Current Organism:
Cellulophaga tyrosinoxydans
NCBI taxonomy Id: 504486
Other names: C. tyrosinoxydans, Cellulophaga sp. EM41, Cellulophaga tyrosinoxydans Kahng et al. 2009, DSM 21164, KCTC 22297, strain EM41
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.