Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMC73308.1 | SMC73317.1 | SAMN05660703_2473 | SAMN05660703_2474 | Hypothetical protein. | ATP-dependent RNA helicase RhlE. | 0.620 |
SMC73308.1 | lpxD | SAMN05660703_2473 | SAMN05660703_2472 | Hypothetical protein. | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.565 |
SMC73308.1 | rlmF | SAMN05660703_2473 | SAMN05660703_2475 | Hypothetical protein. | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.448 |
SMC73317.1 | SMC73308.1 | SAMN05660703_2474 | SAMN05660703_2473 | ATP-dependent RNA helicase RhlE. | Hypothetical protein. | 0.620 |
SMC73317.1 | lpxD | SAMN05660703_2474 | SAMN05660703_2472 | ATP-dependent RNA helicase RhlE. | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.461 |
SMC73317.1 | rlmF | SAMN05660703_2474 | SAMN05660703_2475 | ATP-dependent RNA helicase RhlE. | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.547 |
lpxD | SMC73308.1 | SAMN05660703_2472 | SAMN05660703_2473 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | Hypothetical protein. | 0.565 |
lpxD | SMC73317.1 | SAMN05660703_2472 | SAMN05660703_2474 | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | ATP-dependent RNA helicase RhlE. | 0.461 |
rlmF | SMC73308.1 | SAMN05660703_2475 | SAMN05660703_2473 | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA. | Hypothetical protein. | 0.448 |
rlmF | SMC73317.1 | SAMN05660703_2475 | SAMN05660703_2474 | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA. | ATP-dependent RNA helicase RhlE. | 0.547 |