STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC80255.1alpha-L-rhamnosidase. (926 aa)    
Predicted Functional Partners:
SMC80307.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  0.902
SMC80326.1
Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.
 
     0.868
SMC80296.1
alpha-L-rhamnosidase.
 
    
0.815
SMC80272.1
Arylsulfatase A.
 
     0.811
SMC80285.1
Arylsulfatase A.
 
     0.800
SMC80237.1
alpha-L-rhamnosidase.
 
    
0.778
SMC80315.1
Alginate lyase.
 
     0.729
SMC79951.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
     0.690
SMC80512.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
   0.670
SMC79843.1
Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family.
  
     0.668
Your Current Organism:
Cellulophaga tyrosinoxydans
NCBI taxonomy Id: 504486
Other names: C. tyrosinoxydans, Cellulophaga sp. EM41, Cellulophaga tyrosinoxydans Kahng et al. 2009, DSM 21164, KCTC 22297, strain EM41
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