STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL88357.1Hypothetical protein. (111 aa)    
Predicted Functional Partners:
GAL88358.1
Hypothetical protein.
       0.689
GAL88359.1
leucyl-tRNA synthetase.
       0.689
GAL88356.1
SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6)) -dimethyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
       0.582
GAL89641.1
Hypothetical protein.
  
     0.575
GAL90895.1
Hypothetical protein.
  
     0.560
GAL90187.1
Hypothetical protein.
  
     0.510
GAL88671.1
Hypothetical protein.
  
     0.506
GAL90934.1
Preprotein translocase subunit YajC.
  
     0.494
GAL89268.1
Hypothetical protein.
  
     0.488
GAL90226.1
Hypothetical protein.
  
     0.476
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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