STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL89486.1Hypothetical protein. (1099 aa)    
Predicted Functional Partners:
GAL89487.1
Hypothetical protein.
 
    0.893
GAL89485.1
Gluconolactonase.
 
     0.696
GAL89484.1
Hypothetical protein.
       0.651
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.642
GAL88151.1
Glucose-methanol-choline (GMC) oxidoreductase.
  
  
  0.535
GAL89488.1
Myo-inositol 2-dehydrogenase.
       0.499
GAL89489.1
Succinoglycan biosynthesis protein.
       0.499
GAL89476.1
D-galactose 1-dehydrogenase.
 
     0.478
GAL88150.1
Hypothetical protein.
  
     0.476
GAL89483.1
Cellulase.
       0.451
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.