STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL89009.1DNA-cytosine methyltransferase. (423 aa)    
Predicted Functional Partners:
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
    
 0.905
GAL87942.1
Very-short-patch mismatch repair endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination.
   
 0.887
GAL88913.1
DNA-cytosine methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
  
  0.884
GAL88068.1
Glutamate synthase [NADPH] large chain.
     
 0.880
GAL87943.1
Adenosylhomocysteinase.
    
  0.872
GAL90809.1
DNA-directed RNA polymerase beta subunit; Belongs to the RNA polymerase beta chain family.
    
 
 0.766
GAL88888.1
DnaJ-like protein DjlA.
  
 
 0.754
GAL90717.1
DnaJ-class molecular chaperone CbpA.
  
 
 0.746
GAL90093.1
Chaperone protein DnaJ.
  
 
 0.746
GAL87926.1
DNA-binding response regulator.
  
 
 0.737
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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