STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL89947.1Peptidoglycan-binding LysM. (125 aa)    
Predicted Functional Partners:
GAL88292.1
Hypothetical protein.
  
   0.913
GAL90703.1
Hypothetical protein.
   
  
 0.726
GAL90880.1
GMP synthase.
    
  0.704
GAL90858.1
Molybdopterin binding motif CinA; Belongs to the CinA family.
    
  0.700
GAL89946.1
Hypothetical protein.
       0.509
GAL89945.1
SSU ribosomal protein S1p.
       0.485
GAL87891.1
Hypothetical protein.
  
     0.427
GAL89052.1
Putative metallopeptidase.
  
 
   0.406
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.