STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL89971.1Putative peptidase. (228 aa)    
Predicted Functional Partners:
GAL89970.1
Hypothetical protein.
       0.689
GAL89972.1
Hypothetical protein.
       0.613
GAL89973.1
Branched-chain amino acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
       0.517
GAL89969.1
Cell division inhibitor.
       0.467
GAL88671.1
Hypothetical protein.
  
     0.458
GAL88747.1
Cell division protein DivIC.
  
     0.434
GAL90106.1
Chorismate synthase.
    
  0.421
GAL89313.1
Hypothetical protein.
  
     0.413
GAL89273.1
Hypothetical protein.
 
     0.404
GAL88311.1
uroporphyrinogen-III synthase HemD.
  
     0.401
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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