Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GAL89187.1 | GAL89193.1 | JCM19538_2850 | JCM19538_2856 | Coproporphyrinogen III oxidase. | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.645 |
GAL89187.1 | GAL89203.1 | JCM19538_2850 | JCM19538_2866 | Coproporphyrinogen III oxidase. | Protoporphyrinogen IX oxidase novel form HemJ. | 0.939 |
GAL89187.1 | hemE | JCM19538_2850 | JCM19538_2854 | Coproporphyrinogen III oxidase. | Uroporphyrinogen III decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.976 |
GAL89187.1 | hemH | JCM19538_2850 | JCM19538_2863 | Coproporphyrinogen III oxidase. | Ferrochelatase protoheme ferro-lyase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.755 |
GAL89193.1 | GAL89187.1 | JCM19538_2856 | JCM19538_2850 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | Coproporphyrinogen III oxidase. | 0.645 |
GAL89193.1 | GAL90903.1 | JCM19538_2856 | JCM19538_961 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | Magnesium chelatase subunit ChlI. | 0.415 |
GAL89193.1 | hemE | JCM19538_2856 | JCM19538_2854 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | Uroporphyrinogen III decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. | 0.995 |
GAL89193.1 | hemH | JCM19538_2856 | JCM19538_2863 | Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | Ferrochelatase protoheme ferro-lyase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.612 |
GAL89199.1 | GAL89201.1 | JCM19538_2862 | JCM19538_2864 | Hypothetical protein. | Multi antimicrobial extrusion protein. | 0.613 |
GAL89199.1 | GAL89202.1 | JCM19538_2862 | JCM19538_2865 | Hypothetical protein. | Glycosyl hydrolase BNR repeat precursor. | 0.480 |
GAL89199.1 | GAL89203.1 | JCM19538_2862 | JCM19538_2866 | Hypothetical protein. | Protoporphyrinogen IX oxidase novel form HemJ. | 0.480 |
GAL89199.1 | hemH | JCM19538_2862 | JCM19538_2863 | Hypothetical protein. | Ferrochelatase protoheme ferro-lyase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.613 |
GAL89201.1 | GAL89199.1 | JCM19538_2864 | JCM19538_2862 | Multi antimicrobial extrusion protein. | Hypothetical protein. | 0.613 |
GAL89201.1 | GAL89202.1 | JCM19538_2864 | JCM19538_2865 | Multi antimicrobial extrusion protein. | Glycosyl hydrolase BNR repeat precursor. | 0.596 |
GAL89201.1 | GAL89203.1 | JCM19538_2864 | JCM19538_2866 | Multi antimicrobial extrusion protein. | Protoporphyrinogen IX oxidase novel form HemJ. | 0.596 |
GAL89201.1 | hemH | JCM19538_2864 | JCM19538_2863 | Multi antimicrobial extrusion protein. | Ferrochelatase protoheme ferro-lyase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.781 |
GAL89202.1 | GAL89199.1 | JCM19538_2865 | JCM19538_2862 | Glycosyl hydrolase BNR repeat precursor. | Hypothetical protein. | 0.480 |
GAL89202.1 | GAL89201.1 | JCM19538_2865 | JCM19538_2864 | Glycosyl hydrolase BNR repeat precursor. | Multi antimicrobial extrusion protein. | 0.596 |
GAL89202.1 | GAL89203.1 | JCM19538_2865 | JCM19538_2866 | Glycosyl hydrolase BNR repeat precursor. | Protoporphyrinogen IX oxidase novel form HemJ. | 0.773 |
GAL89202.1 | hemH | JCM19538_2865 | JCM19538_2863 | Glycosyl hydrolase BNR repeat precursor. | Ferrochelatase protoheme ferro-lyase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. | 0.596 |
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