STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL88636.1Putative outer membrane protein. (566 aa)    
Predicted Functional Partners:
GAL88637.1
Putative outer membrane protein.
 
 
   0.971
GAL88635.1
Hypothetical protein.
 
     0.914
GAL88638.1
Sucrose-6-phosphate hydrolase; Belongs to the glycosyl hydrolase 32 family.
 
     0.884
GAL88639.1
Sucrose-6-phosphate hydrolase; Belongs to the glycosyl hydrolase 32 family.
 
     0.847
GAL88641.1
DNA-binding response regulator.
 
 
   0.825
GAL88633.1
Sucrose-6-phosphate hydrolase; Belongs to the glycosyl hydrolase 32 family.
 
     0.770
GAL88640.1
D-xylose proton-symporter XylE; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
 
     0.707
GAL88993.1
TonB family protein.
  
     0.672
GAL88634.1
Hypothetical protein.
       0.645
GAL88632.1
Fructokinase.
 
     0.615
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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