STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL89789.1Beta-galactosidase. (865 aa)    
Predicted Functional Partners:
GAL89788.1
alfa-L-rhamnosidase.
 
   0.858
GAL89790.1
Choline-sulfatase.
 
   0.789
GAL89793.1
Hypothetical glycoside hydrolase.
 
  
  0.773
GAL90236.1
Glucuronyl hydrolase.
 
  
  0.756
GAL89791.1
Rhamnogalacturonides degradation protein RhiN.
  
  0.744
GAL89792.1
Beta-glucosidase.
 
     0.719
GAL89787.1
Putative glycosyslhydrolase; Belongs to the glycosyl hydrolase 2 family.
 
    0.695
GAL89794.1
Oxidoreductase.
    
  0.621
GAL89795.1
Hypothetical protein-signal peptide and transmembrane prediction.
       0.602
GAL90075.1
Putative aldose-1-epimerase.
   
 
  0.575
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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