STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL89814.1TRAP-type C4-dicarboxylate transport system large permease component. (434 aa)    
Predicted Functional Partners:
GAL89815.1
TRAP-type C4-dicarboxylate transport system small permease component.
 
 0.995
GAL89816.1
TRAP-type C4-dicarboxylate transport system periplasmic component.
  
 0.985
GAL89817.1
Uronate isomerase.
  
    0.766
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.513
GAL90268.1
acetyl-CoA:acetoacetyl-CoA transferase alpha subunit; Belongs to the 3-oxoacid CoA-transferase family.
    
  0.462
GAL89822.1
D-mannonate oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
  0.444
GAL88140.1
Malonyl CoA-acyl carrier protein transacylase.
  
 
  0.438
GAL89819.1
2-deoxy-D-gluconate 3-dehydrogenase.
    
  0.434
GAL89818.1
Hypothetical protein.
       0.433
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
  
    0.424
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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