STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL90593.1Hypothetical protein. (61 aa)    
Predicted Functional Partners:
GAL90594.1
Hypothetical protein.
 
     0.782
GAL90595.1
TPR/glycosyl transferase domain protein.
       0.710
GAL90596.1
Polysaccharide biosynthesis protein.
       0.701
GAL90523.1
Hypothetical protein.
  
     0.621
GAL90592.1
Hypothetical protein.
       0.526
GAL90591.1
Hypothetical protein.
       0.485
GAL90326.1
Hypothetical protein.
  
     0.458
GAL89963.1
Hypothetical protein.
  
     0.412
GAL88225.1
G:T/U mismatch-specific uracil/thymine DNA-glycosylase.
  
     0.411
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.