Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| GAL88606.1 | GAL89095.1 | JCM19538_3119 | JCM19538_2084 | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | DNA polymerase III delta prime subunit. | 0.506 |
| GAL88606.1 | GAL89643.1 | JCM19538_3119 | JCM19538_1267 | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.527 |
| GAL88606.1 | GAL90722.1 | JCM19538_3119 | JCM19538_487 | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | ATP-dependent DNA ligase LigC. | 0.895 |
| GAL88606.1 | polA | JCM19538_3119 | JCM19538_2356 | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.616 |
| GAL89095.1 | GAL88606.1 | JCM19538_2084 | JCM19538_3119 | DNA polymerase III delta prime subunit. | DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.506 |
| GAL89095.1 | GAL89255.1 | JCM19538_2084 | JCM19538_3335 | DNA polymerase III delta prime subunit. | Hypothetical protein. | 0.937 |
| GAL89095.1 | GAL89531.1 | JCM19538_2084 | JCM19538_1279 | DNA polymerase III delta prime subunit. | DNA sulfur modification protein DndD. | 0.600 |
| GAL89095.1 | GAL89643.1 | JCM19538_2084 | JCM19538_1267 | DNA polymerase III delta prime subunit. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.998 |
| GAL89095.1 | GAL90722.1 | JCM19538_2084 | JCM19538_487 | DNA polymerase III delta prime subunit. | ATP-dependent DNA ligase LigC. | 0.909 |
| GAL89095.1 | polA | JCM19538_2084 | JCM19538_2356 | DNA polymerase III delta prime subunit. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.952 |
| GAL89255.1 | GAL89095.1 | JCM19538_3335 | JCM19538_2084 | Hypothetical protein. | DNA polymerase III delta prime subunit. | 0.937 |
| GAL89255.1 | GAL89531.1 | JCM19538_3335 | JCM19538_1279 | Hypothetical protein. | DNA sulfur modification protein DndD. | 0.712 |
| GAL89255.1 | GAL89643.1 | JCM19538_3335 | JCM19538_1267 | Hypothetical protein. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.999 |
| GAL89255.1 | GAL90722.1 | JCM19538_3335 | JCM19538_487 | Hypothetical protein. | ATP-dependent DNA ligase LigC. | 0.905 |
| GAL89255.1 | polA | JCM19538_3335 | JCM19538_2356 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.991 |
| GAL89531.1 | GAL89095.1 | JCM19538_1279 | JCM19538_2084 | DNA sulfur modification protein DndD. | DNA polymerase III delta prime subunit. | 0.600 |
| GAL89531.1 | GAL89255.1 | JCM19538_1279 | JCM19538_3335 | DNA sulfur modification protein DndD. | Hypothetical protein. | 0.712 |
| GAL89531.1 | GAL89643.1 | JCM19538_1279 | JCM19538_1267 | DNA sulfur modification protein DndD. | DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.535 |
| GAL89531.1 | GAL90721.1 | JCM19538_1279 | JCM19538_486 | DNA sulfur modification protein DndD. | mRNA 3-end processing factor. | 0.521 |
| GAL89531.1 | GAL90722.1 | JCM19538_1279 | JCM19538_487 | DNA sulfur modification protein DndD. | ATP-dependent DNA ligase LigC. | 0.799 |
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