STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL90303.1Methionine ABC transporter ATP-binding protein. (254 aa)    
Predicted Functional Partners:
GAL90302.1
ABC transporter permease protein.
 0.999
GAL90304.1
VpsC protein.
 
 0.997
GAL90334.1
ABC-type transport system.
 
 0.989
GAL90566.1
Hypothetical protein.
  
 0.970
GAL89280.1
ABC transporter permease protein.
 
      0.899
GAL90335.1
Methionine ABC transporter ATP-binding protein.
  
  
 
0.886
GAL90510.1
Hypothetical protein.
   
  0.798
GAL90511.1
Hypothetical protein.
   
  0.798
GAL88038.1
ABC transporter permease protein.
 
      0.719
GAL88037.1
ABC transporter permease protein.
 
      0.712
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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