STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL90237.1Putative outer membrane protein. (515 aa)    
Predicted Functional Partners:
GAL90238.1
TonB family protein.
 
     0.930
GAL88637.1
Putative outer membrane protein.
 
 
   0.788
GAL90249.1
TonB-dependent receptor.
  
 
   0.775
GAL89785.1
Hypothetical protein.
  
     0.720
GAL89758.1
Hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
   0.715
GAL89784.1
Hypothetical protein.
  
     0.683
GAL89763.1
Hypothetical protein.
  
     0.658
GAL88688.1
Hypothetical protein.
  
     0.631
GAL90236.1
Glucuronyl hydrolase.
 
     0.627
GAL89802.1
TonB-dependent receptor.
  
     0.624
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.