STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL90252.1poly(beta-D-mannuronate) lyase. (740 aa)    
Predicted Functional Partners:
GAL90253.1
Alginate lyase precursor.
 
     0.904
GAL90251.1
Pectin degradation protein KdgF.
 
     0.899
GAL90244.1
Transcriptional regulator.
 
     0.811
GAL90243.1
Predicted mannuronate transporter.
 
    0.808
GAL90249.1
TonB-dependent receptor.
 
     0.804
GAL90245.1
Alginate lyase.
 
  
  0.800
GAL90232.1
Alginate lyase precursor.
 
     0.787
GAL90242.1
Acetoin(diacetyl) reductase.
 
     0.774
GAL90248.1
Putative outer membrane protein.
 
     0.669
GAL88179.1
Alginate lyase precursor.
  
     0.666
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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