STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAL90856.1Fumarylacetoacetate hydrolase family protein. (203 aa)    
Predicted Functional Partners:
GAL90858.1
Molybdopterin binding motif CinA; Belongs to the CinA family.
       0.796
GAL90857.1
Hypothetical protein.
       0.795
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
  0.697
GAL87916.1
Succinate dehydrogenase flavoprotein subunit.
  
 
  0.684
GAL87873.1
Homogentisate 1,2-dioxygenase.
  
  
 0.674
GAL87917.1
Succinate dehydrogenase iron-sulfur protein.
  
 
  0.662
GAL90108.1
Glycolate dehydrogenase subunit GlcD.
  
 
  0.660
GAL87915.1
Succinate dehydrogenase cytochrome b subunit.
    
  0.656
rpmB
LSU ribosomal protein L28p; Belongs to the bacterial ribosomal protein bL28 family.
       0.594
rpmG
LSU ribosomal protein L33p; Belongs to the bacterial ribosomal protein bL33 family.
       0.547
Your Current Organism:
Jejuia pallidilutea
NCBI taxonomy Id: 504487
Other names: DSM 21165, Gaetbulibacter sp. EM39, J. pallidilutea, Jejuia pallidilutea Lee et al. 2009 emend. Park et al 2013, KCTC 22298, strain EM39
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