STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK03670.1Hypothetical protein; COG1002 Type II restriction enzyme, methylase subunits. (1397 aa)    
Predicted Functional Partners:
AGK03674.1
Helicase domain-containing protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
 
     0.857
AGK03671.1
Hypothetical protein.
       0.773
AGK04468.1
Helicase domain-containing protein; COG0553 Superfamily II DNA/RNA helicases, SNF2 family.
 
     0.693
rsmI
uroporphyrin-III C/tetrapyrrole methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.602
AGK03675.1
Transposase IS4 family protein; COG3385 FOG: Transposase and inactivated derivatives.
 
     0.526
AGK03672.1
Hypothetical protein; COG0517 FOG: CBS domain.
     
 0.522
AGK04308.1
Zinc finger SWIM domain-containing protein.
  
     0.512
AGK05223.1
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
    
  0.416
AGK03820.1
UvrD/REP helicase; COG0210 Superfamily I DNA and RNA helicases.
 
     0.408
Your Current Organism:
Meiothermus ruber
NCBI taxonomy Id: 504728
Other names: M. ruber DSM 1279, Meiothermus ruber ATCC 35948, Meiothermus ruber DSM 1279
Server load: low (18%) [HD]