STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK03861.1COG1609 Transcriptional regulators. (326 aa)    
Predicted Functional Partners:
AGK05995.1
COG0067 Glutamate synthase domain 1.
    
 
 0.890
AGK03862.1
Extracellular solute-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.703
AGK03863.1
Binding-protein-dependent transport system inner membrane protein; COG1175 ABC-type sugar transport systems, permease components.
 
     0.638
AGK03860.1
Glucose-1-phosphate thymidylyltransferase; COG1209 dTDP-glucose pyrophosphorylase.
       0.523
AGK03865.1
Amylo-alpha-16-glucosidase; COG3408 Glycogen debranching enzyme.
 
     0.520
AGK03864.1
Binding-protein-dependent transport system inner membrane protein; COG0395 ABC-type sugar transport system, permease component.
       0.477
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
   0.475
AGK05086.1
Trehalose synthase; COG0366 Glycosidases.
   
 
  0.458
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
   0.424
Your Current Organism:
Meiothermus ruber
NCBI taxonomy Id: 504728
Other names: M. ruber DSM 1279, Meiothermus ruber ATCC 35948, Meiothermus ruber DSM 1279
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