STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK03865.1Amylo-alpha-16-glucosidase; COG3408 Glycogen debranching enzyme. (623 aa)    
Predicted Functional Partners:
AGK04231.1
COG0058 Glucan phosphorylase.
  
 0.937
AGK05744.1
COG0033 Phosphoglucomutase.
   
 
 0.828
AGK03862.1
Extracellular solute-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
     0.735
AGK03864.1
Binding-protein-dependent transport system inner membrane protein; COG0395 ABC-type sugar transport system, permease component.
 
     0.694
AGK03863.1
Binding-protein-dependent transport system inner membrane protein; COG1175 ABC-type sugar transport systems, permease components.
 
     0.658
AGK05085.1
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
 
 0.603
AGK05084.1
Alpha,alpha-trehalose-phosphate synthase (UDP-forming); COG0380 Trehalose-6-phosphate synthase.
 
  
  0.568
AGK03866.1
COG2120 Uncharacterized proteins, LmbE homologs.
       0.559
AGK04740.1
COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family.
   
 0.558
glgA
Glycogen/starch synthase ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
    
 0.525
Your Current Organism:
Meiothermus ruber
NCBI taxonomy Id: 504728
Other names: M. ruber DSM 1279, Meiothermus ruber ATCC 35948, Meiothermus ruber DSM 1279
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