STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK04062.1Hypothetical protein. (552 aa)    
Predicted Functional Partners:
AGK03980.1
Hypothetical protein.
  
     0.688
AGK03982.1
Hypothetical protein.
  
     0.630
AGK03981.1
Hypothetical protein.
  
     0.620
AGK03636.1
COG1131 ABC-type multidrug transport system, ATPase component.
 
     0.617
AGK04063.1
Hypothetical protein; COG0517 FOG: CBS domain.
       0.552
AGK04064.1
COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
       0.552
lysS
COG1190 Lysyl-tRNA synthetase (class II); Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 
 0.526
AGK06167.1
COG3629 DNA-binding transcriptional activator of the SARP family.
  
     0.487
AGK06116.1
Putative adenylate/guanylate cyclase; COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
  
     0.467
tilS
tRNA(Ile)-lysidine synthetase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
 
   
 0.461
Your Current Organism:
Meiothermus ruber
NCBI taxonomy Id: 504728
Other names: M. ruber DSM 1279, Meiothermus ruber ATCC 35948, Meiothermus ruber DSM 1279
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.