STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK04228.1Hypothetical protein; COG1040 Predicted amidophosphoribosyltransferases. (182 aa)    
Predicted Functional Partners:
AGK04748.1
DNA internalization-related competence protein ComEC/Rec2; COG0658 Predicted membrane metal-binding protein.
 
  
 0.806
AGK05714.1
Transcriptional regulator TrmB; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
 
 0.781
AGK05694.1
COG0287 Prephenate dehydrogenase.
   
  
 0.740
AGK03650.1
COG1820 N-acetylglucosamine-6-phosphate deacetylase.
  
    0.665
AGK03926.1
COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins.
   
    0.599
AGK03927.1
COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins.
   
    0.599
mtnA
aIF-2BI family translation initiation factor; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
       0.591
AGK04638.1
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
    0.575
AGK05666.1
COG1232 Protoporphyrinogen oxidase.
  
    0.575
AGK04230.1
COG2367 Beta-lactamase class A.
       0.554
Your Current Organism:
Meiothermus ruber
NCBI taxonomy Id: 504728
Other names: M. ruber DSM 1279, Meiothermus ruber ATCC 35948, Meiothermus ruber DSM 1279
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