Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AGK04742.1 | AGK05513.1 | K649_07220 | K649_11105 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | 0.999 |
| AGK04742.1 | dnaA | K649_07220 | K649_07225 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.995 |
| AGK04742.1 | gyrB | K649_07220 | K649_07885 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA gyrase subunit B; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit. | 0.698 |
| AGK04742.1 | pheT | K649_07220 | K649_09180 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | phenylalanyl-tRNA ligase subunit beta; COG0073 EMAP domain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.480 |
| AGK04742.1 | recF | K649_07220 | K649_07520 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Recombination protein F; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.844 |
| AGK04742.1 | recR | K649_07220 | K649_05415 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.568 |
| AGK04801.1 | AGK04803.1 | K649_07515 | K649_07525 | Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. | Hypothetical protein. | 0.550 |
| AGK04801.1 | recF | K649_07515 | K649_07520 | Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. | Recombination protein F; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.550 |
| AGK04803.1 | AGK04801.1 | K649_07525 | K649_07515 | Hypothetical protein. | Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. | 0.550 |
| AGK04803.1 | recF | K649_07525 | K649_07520 | Hypothetical protein. | Recombination protein F; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.773 |
| AGK05320.1 | AGK05321.1 | K649_10140 | K649_10145 | Hypothetical protein; COG0628 Predicted permease. | Hypothetical protein; COG0628 Predicted permease. | 0.783 |
| AGK05320.1 | AGK05513.1 | K649_10140 | K649_11105 | Hypothetical protein; COG0628 Predicted permease. | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | 0.492 |
| AGK05320.1 | recF | K649_10140 | K649_07520 | Hypothetical protein; COG0628 Predicted permease. | Recombination protein F; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.596 |
| AGK05321.1 | AGK05320.1 | K649_10145 | K649_10140 | Hypothetical protein; COG0628 Predicted permease. | Hypothetical protein; COG0628 Predicted permease. | 0.783 |
| AGK05321.1 | AGK05513.1 | K649_10145 | K649_11105 | Hypothetical protein; COG0628 Predicted permease. | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | 0.436 |
| AGK05321.1 | recF | K649_10145 | K649_07520 | Hypothetical protein; COG0628 Predicted permease. | Recombination protein F; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. | 0.548 |
| AGK05513.1 | AGK04742.1 | K649_11105 | K649_07220 | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.999 |
| AGK05513.1 | AGK05320.1 | K649_11105 | K649_10140 | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | Hypothetical protein; COG0628 Predicted permease. | 0.492 |
| AGK05513.1 | AGK05321.1 | K649_11105 | K649_10145 | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | Hypothetical protein; COG0628 Predicted permease. | 0.436 |
| AGK05513.1 | dnaA | K649_11105 | K649_07225 | DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI). | Chromosomal replication initiation protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.572 |
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