STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK05062.1Fimbrial assembly family protein. (221 aa)    
Predicted Functional Partners:
AGK05063.1
COG4972 Tfp pilus assembly protein, ATPase PilM.
  
 0.999
AGK05061.1
COG3167 Tfp pilus assembly protein PilO.
  
 
 0.991
AGK05060.1
Hypothetical protein.
     
 0.861
AGK04179.1
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
 
 0.832
AGK05059.1
Type II and III secretion system protein; COG4796 Type II secretory pathway, component HofQ.
     
 0.825
AGK04272.1
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
  
 
 0.782
AGK05661.1
Type II secretion system protein; COG1459 Type II secretory pathway, component PulF.
   
 
 0.679
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
   
   0.675
AGK04273.1
Type II secretion system protein; COG1459 Type II secretory pathway, component PulF.
   
 
 0.588
aroB
COG0337 3-dehydroquinate synthetase.
  
    0.520
Your Current Organism:
Meiothermus ruber
NCBI taxonomy Id: 504728
Other names: M. ruber DSM 1279, Meiothermus ruber ATCC 35948, Meiothermus ruber DSM 1279
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.