Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFF63786.1 | SFF88096.1 | SAMN05421678_101152 | SAMN05421678_102510 | Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif. | Hypothetical protein. | 0.666 |
SFF63786.1 | SFG64971.1 | SAMN05421678_101152 | SAMN05421678_107220 | Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif. | Hypothetical protein. | 0.686 |
SFF63786.1 | arc | SAMN05421678_101152 | SAMN05421678_12550 | Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif. | Proteasome-associated ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.995 |
SFF63786.1 | glpK | SAMN05421678_101152 | SAMN05421678_105224 | Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.993 |
SFF63786.1 | prcA | SAMN05421678_101152 | SAMN05421678_1073 | Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.990 |
SFF63786.1 | prcB | SAMN05421678_101152 | SAMN05421678_1072 | Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif. | Proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.990 |
SFF88096.1 | SFF63786.1 | SAMN05421678_102510 | SAMN05421678_101152 | Hypothetical protein. | Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif. | 0.666 |
SFF88096.1 | SFG02974.1 | SAMN05421678_102510 | SAMN05421678_103370 | Hypothetical protein. | Acetoin utilization protein AcuC. | 0.871 |
SFF88096.1 | SFG64971.1 | SAMN05421678_102510 | SAMN05421678_107220 | Hypothetical protein. | Hypothetical protein. | 0.819 |
SFF88096.1 | SFG75759.1 | SAMN05421678_102510 | SAMN05421678_108152 | Hypothetical protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.770 |
SFF88096.1 | SFH16586.1 | SAMN05421678_102510 | SAMN05421678_11351 | Hypothetical protein. | DNA polymerase-3 subunit beta. | 0.770 |
SFF88096.1 | SFH25176.1 | SAMN05421678_102510 | SAMN05421678_114102 | Hypothetical protein. | Acyl-CoA-binding protein. | 0.762 |
SFF88096.1 | arc | SAMN05421678_102510 | SAMN05421678_12550 | Hypothetical protein. | Proteasome-associated ATPase; ATPase which is responsible for recognizing, binding, unfolding and translocation of pupylated proteins into the bacterial 20S proteasome core particle. May be essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C-termini of the proteasomal ATPase may function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. | 0.747 |
SFF88096.1 | glpK | SAMN05421678_102510 | SAMN05421678_105224 | Hypothetical protein. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family. | 0.846 |
SFF88096.1 | prcA | SAMN05421678_102510 | SAMN05421678_1073 | Hypothetical protein. | Proteasome alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1A family. | 0.798 |
SFF88096.1 | prcB | SAMN05421678_102510 | SAMN05421678_1072 | Hypothetical protein. | Proteasome beta subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. Belongs to the peptidase T1B family. | 0.798 |
SFG02974.1 | SFF88096.1 | SAMN05421678_103370 | SAMN05421678_102510 | Acetoin utilization protein AcuC. | Hypothetical protein. | 0.871 |
SFG64971.1 | SFF63786.1 | SAMN05421678_107220 | SAMN05421678_101152 | Hypothetical protein. | Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN metalloenzyme (JAMM) motif. | 0.686 |
SFG64971.1 | SFF88096.1 | SAMN05421678_107220 | SAMN05421678_102510 | Hypothetical protein. | Hypothetical protein. | 0.819 |
SFG64971.1 | SFH25176.1 | SAMN05421678_107220 | SAMN05421678_114102 | Hypothetical protein. | Acyl-CoA-binding protein. | 0.624 |
page 1 of 3