Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDH62227.1 | SDH62264.1 | SAMN05421871_101740 | SAMN05421871_101741 | Hypothetical protein. | MerR HTH family regulatory protein. | 0.788 |
| SDH62227.1 | SDI85415.1 | SAMN05421871_101740 | SAMN05421871_10874 | Hypothetical protein. | Cell division septum initiation DivIVA, interacts with FtsZ, MinD. | 0.616 |
| SDH62227.1 | whiB-3 | SAMN05421871_101740 | SAMN05421871_101742 | Hypothetical protein. | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.528 |
| SDH62264.1 | SDH62227.1 | SAMN05421871_101741 | SAMN05421871_101740 | MerR HTH family regulatory protein. | Hypothetical protein. | 0.788 |
| SDH62264.1 | SDH76985.1 | SAMN05421871_101741 | SAMN05421871_10213 | MerR HTH family regulatory protein. | RNA polymerase nonessential primary-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.440 |
| SDH62264.1 | sigA | SAMN05421871_101741 | SAMN05421871_108292 | MerR HTH family regulatory protein. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.440 |
| SDH62264.1 | whiB-3 | SAMN05421871_101741 | SAMN05421871_101742 | MerR HTH family regulatory protein. | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.597 |
| SDH76985.1 | SDH62264.1 | SAMN05421871_10213 | SAMN05421871_101741 | RNA polymerase nonessential primary-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | MerR HTH family regulatory protein. | 0.440 |
| SDH76985.1 | SDH87720.1 | SAMN05421871_10213 | SAMN05421871_102517 | RNA polymerase nonessential primary-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | MerR HTH family regulatory protein. | 0.440 |
| SDH76985.1 | whiB-3 | SAMN05421871_10213 | SAMN05421871_101742 | RNA polymerase nonessential primary-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.650 |
| SDH87720.1 | SDH76985.1 | SAMN05421871_102517 | SAMN05421871_10213 | MerR HTH family regulatory protein. | RNA polymerase nonessential primary-like sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.440 |
| SDH87720.1 | SDI62887.1 | SAMN05421871_102517 | SAMN05421871_106241 | MerR HTH family regulatory protein. | Hypothetical protein. | 0.720 |
| SDH87720.1 | SDI86463.1 | SAMN05421871_102517 | SAMN05421871_108117 | MerR HTH family regulatory protein. | Protein of unknown function. | 0.756 |
| SDH87720.1 | SDJ54999.1 | SAMN05421871_102517 | SAMN05421871_1227 | MerR HTH family regulatory protein. | Broad specificity phosphatase PhoE. | 0.749 |
| SDH87720.1 | sigA | SAMN05421871_102517 | SAMN05421871_108292 | MerR HTH family regulatory protein. | RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.440 |
| SDH87720.1 | whiB-3 | SAMN05421871_102517 | SAMN05421871_101742 | MerR HTH family regulatory protein. | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.562 |
| SDI05879.1 | whiB-3 | SAMN05421871_10349 | SAMN05421871_101742 | Putative RecB family exonuclease. | WhiB family transcriptional regulator, redox-sensing transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.547 |
| SDI62887.1 | SDH87720.1 | SAMN05421871_106241 | SAMN05421871_102517 | Hypothetical protein. | MerR HTH family regulatory protein. | 0.720 |
| SDI62887.1 | SDI86463.1 | SAMN05421871_106241 | SAMN05421871_108117 | Hypothetical protein. | Protein of unknown function. | 0.600 |
| SDI62887.1 | SDJ54999.1 | SAMN05421871_106241 | SAMN05421871_1227 | Hypothetical protein. | Broad specificity phosphatase PhoE. | 0.721 |
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