STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH45790.1Biotin carboxylase. (410 aa)    
Predicted Functional Partners:
SDH62823.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
  
 0.974
SDH45768.1
Siderophore synthetase component.
 
     0.961
SDH45750.1
Siderophore synthetase component.
 
     0.960
SDH45720.1
Diaminopimelate decarboxylase.
 
     0.913
SDI79248.1
Acyl transferase domain-containing protein.
  
 
 0.793
SDI38409.1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
   0.791
SDH79881.1
Glutamate synthase (NADPH/NADH) large chain.
   
 
 0.752
SDH82407.1
Glutamate synthase (NADPH/NADH) large chain.
   
 
 0.752
SDI07487.1
Urea carboxylase.
   
  0.740
SDH45700.1
Hypothetical protein.
       0.716
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.