STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH76789.1Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. (278 aa)    
Predicted Functional Partners:
SDI33139.1
Peptidase family M23.
  
     0.767
SDI99311.1
Cell division transport system permease protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.674
SDJ24631.1
Membrane carboxypeptidase (penicillin-binding protein).
 
   
 0.674
SDI52820.1
LysM domain-containing protein.
 
    
 0.619
SDI58675.1
Membrane carboxypeptidase (penicillin-binding protein).
  
     0.566
SDH78007.1
Cell division protein FtsW; Belongs to the SEDS family.
 
   
 0.504
mltG
UPF0755 protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
   
 0.493
SDH90309.1
SPFH domain / Band 7 family protein.
     
 0.491
ftsE
Cell division transport system ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.
 
   
 0.482
SDH56863.1
Sporulation and spore germination.
      
 0.475
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
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