STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH92724.1Regulatory protein, luxR family. (328 aa)    
Predicted Functional Partners:
SDH44476.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.636
SDH92771.1
Biotin carboxylase.
 
     0.609
SDI06537.1
Helix-turn-helix domain-containing protein.
  
    0.548
SDH67007.1
Protein of unknown function.
  
     0.517
SDI14273.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.516
SDI76578.1
GAF domain-containing protein.
  
  0.516
SDJ43862.1
Histidine kinase-like ATPase domain-containing protein.
  
  0.516
SDH51478.1
Regulatory protein, luxR family.
 
  0.443
SDH92739.1
Hypothetical protein.
       0.435
SDI09585.1
Helix-turn-helix domain-containing protein.
  
 
   0.434
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
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