STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI36363.1Transglutaminase-like superfamily protein. (234 aa)    
Predicted Functional Partners:
trpF-2
Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
 
     0.814
SDI36481.1
Phosphopantetheine attachment site.
 
     0.806
SDI36387.1
Acyl-CoA dehydrogenase.
      0.799
SDI36313.1
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.796
SDI36129.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
       0.776
ubiX
4-hydroxy-3-polyprenylbenzoate decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
       0.773
SDI36168.1
4-hydroxy-3-polyprenylbenzoate decarboxylase; Belongs to the UbiD family.
       0.773
SDI36204.1
Indole-3-glycerol phosphate synthase.
       0.773
SDI36503.1
Amino acid adenylation domain-containing protein.
       0.729
SDI36407.1
L-ectoine synthase.
       0.709
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
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