STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI30956.1RHS repeat-associated core domain-containing protein. (1966 aa)    
Predicted Functional Partners:
SDH90479.1
TIGR04222 domain-containing protein.
  
     0.581
SDI64166.1
Hypothetical protein.
  
     0.564
SDH51478.1
Regulatory protein, luxR family.
  
     0.485
SDI88178.1
Carboxypeptidase regulatory-like domain-containing protein.
  
    0.481
SDJ31776.1
Carbon monoxide dehydrogenase subunit G.
  
     0.470
SDI30928.1
Beta-galactosidase.
       0.466
SDJ13478.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.458
SDI15270.1
Helix-turn-helix domain-containing protein.
  
     0.455
SDI71700.1
Putative Ig domain-containing protein.
  
     0.429
SDJ50702.1
Proprotein convertase P-domain-containing protein.
  
     0.429
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
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