STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI53042.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
SDI52981.1
Hypothetical protein.
 
 
 0.978
SDI53071.1
Signal transduction histidine kinase.
   
 0.955
SDI53021.1
Protein of unknown function.
 
  
 0.939
SDH67518.1
Hypothetical protein.
 
 
 0.929
SDH81436.1
Hypothetical protein.
 
 
 0.929
SDI36904.1
Hypothetical protein.
 
 
 0.929
SDI30646.1
Hypothetical protein.
 
 
 0.929
SDI96203.1
Signal recognition particle receptor subunit beta, a GTPase.
 
 
 0.929
SDI34605.1
Hypothetical protein.
 
   0.926
SDI05226.1
Hypothetical protein.
 
   0.925
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.