STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI62206.1RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily. (174 aa)    
Predicted Functional Partners:
SDI62234.1
Hypothetical protein.
       0.773
SDJ09823.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.718
SDI67413.1
Hypothetical protein.
   
   0.699
SDJ37778.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.643
SDI15651.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.620
SDI57820.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.606
SDI62189.1
DNA-binding transcriptional regulator YbjK.
  
    0.603
SDI62264.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.594
SDI21497.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.578
SDI85697.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.573
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.