STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI74097.1Ca-activated chloride channel family protein. (584 aa)    
Predicted Functional Partners:
SDI74184.1
Magnesium chelatase subunit I.
  
 0.824
SDI74119.1
WD40 repeat.
 
    0.807
SDI76701.1
Magnesium chelatase subunit D.
  
 0.776
SDI74080.1
Hypothetical protein.
       0.741
SDI31416.1
Hypothetical protein.
 
 
   0.560
SDH66310.1
DNA-binding transcriptional activator of the SARP family.
 
     0.546
SDI74132.1
Hypothetical protein.
       0.482
SDH66329.1
Calx-beta domain-containing protein.
  
     0.481
SDH44605.1
CHAT domain-containing protein.
  
     0.468
SDH46720.1
Protein of unknown function.
   
   0.460
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.