STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI84001.1Polysaccharide transporter, PST family. (478 aa)    
Predicted Functional Partners:
SDI84166.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.964
SDI83962.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.948
SDI84084.1
O-Antigen ligase.
     0.947
SDI84057.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.936
SDI84121.1
Hypothetical protein.
 
    0.935
SDI84105.1
Polysaccharide deacetylase.
 
     0.916
SDI83978.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.904
SDI64892.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.876
SDI84208.1
Protoporphyrinogen oxidase.
 
    0.800
SDI84037.1
Hypothetical protein.
       0.788
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
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