STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI89502.1TIGR03085 family protein. (208 aa)    
Predicted Functional Partners:
tuf
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.872
SDH79881.1
Glutamate synthase (NADPH/NADH) large chain.
  
 0.844
SDH82407.1
Glutamate synthase (NADPH/NADH) large chain.
  
 0.844
SDH66423.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
   
 
 0.751
SDI64204.1
Indolepyruvate ferredoxin oxidoreductase.
  
 
 0.708
SDI89477.1
Serine/threonine protein kinase.
  
    0.706
SDH76829.1
Fumarate hydratase, class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.700
SDI99607.1
Nitrate reductase beta subunit.
   
 0.691
SDI22716.1
Glycine/D-amino acid oxidase.
   
 
 0.676
SDH94610.1
Ubiquinol-cytochrome c reductase iron-sulfur subunit.
   
 
 0.639
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
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