STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDI84662.1Anti-sigma-K factor RskA. (240 aa)    
Predicted Functional Partners:
SDI84692.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.996
SDI95703.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.935
SDI21441.1
Protein of unknown function.
  
     0.534
SDI67589.1
DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit.
 
     0.513
SDI48907.1
TIGR03086 family protein.
  
     0.488
SDI19336.1
TIGR03086 family protein.
  
     0.484
SDI60524.1
TIGR03086 family protein.
  
     0.449
SDI21435.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
  
     0.445
SDI84705.1
Cysteine dioxygenase type I.
       0.435
SDH65625.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
   0.415
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.