STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ27660.1Copper transport protein. (587 aa)    
Predicted Functional Partners:
SDJ27690.1
Uncharacterized protein YcnI.
 
  
 0.995
SDJ42086.1
Uncharacterized protein YcnI.
 
  
 0.978
SDJ27725.1
Plastocyanin.
 
   
 0.867
SDJ16598.1
Pyridine nucleotide-disulphide oxidoreductase.
    
   0.822
SDJ27719.1
Multicopper oxidase.
 
   
 0.802
SDH87995.1
Putative copper resistance protein D.
  
  
 0.711
SDJ27642.1
Transposase.
 
     0.697
SDJ37710.1
Hypothetical protein.
  
    0.670
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
       0.560
pheA
Prephenate dehydratase.
     
 0.529
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
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