STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ44123.1RNA polymerase sigma-70 factor, ECF subfamily. (215 aa)    
Predicted Functional Partners:
SDH62158.1
Anti-sigma-D factor RsdA to sigma factor binding region.
 
 
 
 0.937
SDI57820.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.601
SDH56347.1
Mycothiol system anti-sigma-R factor.
  
 
 0.540
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.520
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.501
SDJ31548.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.498
SDJ44140.1
Flagellar protein FlgJ.
       0.494
SDJ23492.1
N-acetylmuramoyl-L-alanine amidase.
   
    0.477
SDH56354.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.470
SDJ43090.1
RNA polymerase sigma-70 factor, sigma-E family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.455
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
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